Feature-overlapper: The tool for DNA analysis overlap

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dc.contributor.authorHavlík, Jancs
dc.contributor.authorBrázda, Václavcs
dc.contributor.authorStaněk, Kamilcs
dc.contributor.authorJežek, Michalcs
dc.contributor.authorŠťastný, Jiřícs
dc.coverage.issue5cs
dc.coverage.volume16cs
dc.date.issued2023-05-01cs
dc.description.abstractThis contribution puts focus on a command line tool, which enables detection and analysis of overlapping regions between G-quadruplexes, R-loops and genome annotations for selected genomes. G-quadruplexes and R-loops are structures with high Guanine density, which is an important creation factor for both structures. Common regions (overlap) between both structures can provide us with better possibility to create precise model to detect R-loops and valuable insights when inspecting genome annotations with high R-loop density. The tool was used for multiple research projects and is under constant development bringing new features to the world of bioinformatics.en
dc.formattextcs
dc.format.extent1-4cs
dc.format.mimetypeapplication/pdfcs
dc.identifier.citationSoftware Impacts. 2023, vol. 16, issue 5, p. 1-4.en
dc.identifier.doi10.1016/j.simpa.2023.100498cs
dc.identifier.issn2665-9638cs
dc.identifier.orcid0000-0003-2837-4226cs
dc.identifier.orcid0000-0002-8131-1948cs
dc.identifier.orcid0000-0003-4122-9584cs
dc.identifier.orcid0000-0003-3724-6357cs
dc.identifier.other183463cs
dc.identifier.researcheridF-9582-2011cs
dc.identifier.researcheridCAG-1933-2022cs
dc.identifier.researcheridCAG-1913-2022cs
dc.identifier.researcheridF-8025-2012cs
dc.identifier.scopus58167337900cs
dc.identifier.scopus57191582635cs
dc.identifier.urihttp://hdl.handle.net/11012/213660
dc.language.isoencs
dc.publisherElseviercs
dc.relation.ispartofSoftware Impactscs
dc.relation.urihttps://www.sciencedirect.com/science/article/pii/S2665963823000350?via%3Dihubcs
dc.rightsCreative Commons Attribution 4.0 Internationalcs
dc.rights.accessopenAccesscs
dc.rights.sherpahttp://www.sherpa.ac.uk/romeo/issn/2665-9638/cs
dc.rights.urihttp://creativecommons.org/licenses/by/4.0/cs
dc.subjectDNAen
dc.subjectR-loopen
dc.subjectG-quadruplexen
dc.subjectAnnotationen
dc.titleFeature-overlapper: The tool for DNA analysis overlapen
dc.type.driverarticleen
dc.type.statusPeer-revieweden
dc.type.versionpublishedVersionen
sync.item.dbidVAV-183463en
sync.item.dbtypeVAVen
sync.item.insts2025.02.03 15:47:53en
sync.item.modts2025.01.17 16:45:36en
thesis.grantorVysoké učení technické v Brně. Fakulta strojního inženýrství. Ústav automatizace a informatikycs
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