The COG-or: the Improved Functional Annotation of Bacterial Genomes

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but.event.date26.04.2022cs
but.event.titleSTUDENT EEICT 2022cs
dc.contributor.authorPolakovičová, Petra
dc.contributor.authorSedlář, Karel
dc.date.accessioned2022-12-06T13:21:58Z
dc.date.available2022-12-06T13:21:58Z
dc.date.issued2022cs
dc.description.abstractThe study of bacterial organisms is given great emphasis in scientific research. By studying the bacterial genome, scientists can gain knowledge of various infectious diseases. Nowadays, it is even possible to edit genes and thus advancing the field of tailored medicine by treating many genetic diseases. Furthermore, it is becoming the norm to utilize bacteria in the industry for their ability to produce important products such as plastics, or fuels. It is therefore essential to extract the necessary information about its genes and other features. This paper focuses mainly on improving the functional annotation of bacterial genomes, classification of protein-coding sequences into clusters of orthologous groups, and visualization of the final annotated genome. For this task, the python package was developed with several functions for working with the outputs of multiple annotation tools, namely eggNOG-mapper, Operon-mapper, and Batch CD-Search. The package was tested on Clostridium diolis DSM 15410 and Clostridium beijerinckii DSM 791.en
dc.formattextcs
dc.format.extent84-87cs
dc.format.mimetypeapplication/pdfen
dc.identifier.citationProceedings II of the 28st Conference STUDENT EEICT 2022: Selected papers. s. 84-87. ISBN 978-80-214-6030-0cs
dc.identifier.doi10.13164/eeict.2022.84
dc.identifier.isbn978-80-214-6030-0
dc.identifier.urihttp://hdl.handle.net/11012/208608
dc.language.isoencs
dc.publisherVysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologiícs
dc.relation.ispartofProceedings II of the 28st Conference STUDENT EEICT 2022: Selected papersen
dc.relation.urihttps://conf.feec.vutbr.cz/eeict/index/pages/view/ke_stazenics
dc.rights© Vysoké učení technické v Brně, Fakulta elektrotechniky a komunikačních technologiícs
dc.rights.accessopenAccessen
dc.subjectBacterial genome, Functional annotation, COG, eggNOG-mapper, Operonmapper, Batch CD-Searchen
dc.titleThe COG-or: the Improved Functional Annotation of Bacterial Genomesen
dc.type.driverconferenceObjecten
dc.type.statusPeer-revieweden
dc.type.versionpublishedVersionen
eprints.affiliatedInstitution.departmentFakulta elektrotechniky a komunikačních technologiícs
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