\chapter{Sample configuration XML file}\label{ap.config}

\begin{lstlisting}
<?xml version="1.0" encoding="utf-8"?>

<radiation-config>
  <system-type>TwoDetector</system-type>
  <measurement-mode>Circle3</measurement-mode>
  <detector-config>
    <type>Main</type>
    <ip-address>10.0.70.100</ip-address>
    <port>17000</port>
    <high-voltage>605</high-voltage>
  </detector-config>
  <detector-config>
    <type>Secondary</type>
    <ip-address>10.0.70.101</ip-address>
    <port>17000</port>
    <high-voltage>505</high-voltage>
    <sensitivity>1.05</sensitivity>
  </detector-config>
  <timer-config>
    <measurement-period>1000</measurement-period>
    <measurement-time>1800</measurement-time>
  </timer-config>
  <gnss-config>
    <used>Yes</used>
    <port>8000</port>
    <update-rate>10</update-rate>
    <yaw-correction>-30</yaw-correction>
  </gnss-config>
  <meas-trajectory>
    <base-station>49.2284253,16.5715689</base-station>
    <polygon>
    	<vertex>49.2280794023,16.5721840078</vertex>
    	<vertex>49.2283073013,16.5719443535</vertex>
    	<vertex>49.228389255,16.5719478359</vertex>
    	<vertex>49.2284094344,16.5719942793</vertex>
    	<vertex>49.2283392136,16.5720838814</vertex>
    	<vertex>49.228327559,16.5721530872</vertex>
    	<vertex>49.2281781275,16.5723155872</vertex>
    </polygon>
    <line-sep>1</line-sep>
    <waypoint-sep>0.6</waypoint-sep>
  </meas-trajectory>
  <navigation-config>
    <id>RD</id>
    <ip-address>127.0.0.1</ip-address>
    <port>18000</port>
    <nav-error>0.05,0.05</nav-error>
  </navigation-config>
  <circle-alg-params>             
    <circles>
      <circle>
        <center>49.2281673,16.5722046</center>
        <radius>4</radius>  
      </circle>
      <circle>
        <center>49.2282533,16.5721232</center>
        <radius>4</radius>  
      </circle>
      <circle>
        <center>49.2283381,16.5720061</center>
        <radius>3.5</radius>  
      </circle>
    </circles>
    <data-source>Both</data-source>   
    <peak-threshold>0.8</peak-threshold>
    <peak-shift>-0.2</peak-shift>
    <peak-angular-prominence>20</peak-angular-prominence>
    <dir-prominence>1.1</dir-prominence>
    <yaw-change-deg>9</yaw-change-deg>
    <radius>1.5</radius>
    <loop-threshold>0.5</loop-threshold>
  </circle-alg-params>
</radiation-config>
\end{lstlisting}

\includepdf[pages=1,pagecommand={\chapter{Calibration protocol}\label{ap.calib}},scale=0.8,offset=19mm 0mm]{pdf/protokol}

\chapter{Enclosed CD Content}

\dirtree{%.
.1 /\DTcomment{root of the enclosed CD}.
.2 control software.
.3 RadiationController.sln\DTcomment{VS solution of the control software}.
.3 RadiationController\DTcomment{source codes}.
.4 config\DTcomment{sample configuration files}.
.4 lib\DTcomment{included libraries}.
%.4 Properties.
.2 data processing.
.3 dataLog.csv\DTcomment{sample data from real experiment}.
.3 main.m\DTcomment{executable MATLAB script}.
.2 models\DTcomment{SketchUp 3D models of mounting for detectors}.
.3 mounting\_parts.skp\DTcomment{model for 3D print}.
.3 mounting\_assembly.skp\DTcomment{final assembly}.
.2 text\DTcomment{LaTeX source codes}.
.3 images\DTcomment{all images included in thesis}.
.3 pdf\DTcomment{included PDFs}.
.3 text\DTcomment{individual parts of the thesis}.
.3 sablona-prace.tex\DTcomment{main TeX document}.
.2 lazna\_tomas\_2017.pdf\DTcomment{electronic version of this document}.
}