@BOOK{meduna_automata_languages,
   author = "Alexander Meduna",
   title = "Automata and Languages: Theory and Applications [Springer, 2000]",
   pages = 892,
   year = 2005,
   location = "London, GB",
   publisher = "Springer Verlag",
   ISBN = "1-85233-074-0",
   language = "english",
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}

@website{ceska_study,
    author =       "Milan Češka",
    title =        "Teoretická informatika",
    howpublished = "online",
    url =          "http://www.fit.vutbr.cz/study/courses/TIN/public/Texty/ti.pdf",
    year =        "2002",
}

@ARTICLE{meduna_acta_informatica,
   author = "Alexander Meduna",
   title = "Deep Pushdown Automata",
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   year = 2006,
   location = "Maraburg, DE",
   publisher = "Springer Verlag",
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}

@misc{kovar_study,
    author = "Martin Kovár",
    title = "Diskrérní matematika",
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    year = "2013",
}

@BOOK{meduna_regulated_grammars,
   author = "Alexander Meduna and Petr Zemek",
   title = "Regulated Grammars and Automata",
   pages = 694,
   year = 2014,
   location = "New York, US",
   publisher = "Springer US",
   ISBN = "978-1-4939-0368-9",
   doi = "10.1007/978-1-4939-0369-6",
   language = "english",
   url = "https://www.fit.vut.cz/research/publication/10498"
}

@BOOK{genetika,
   author = "Dagmar Sitná and Renata Kůstová",
   title = "Biologie Studijní text pro žáky 1. ročníku SZŠ Nymburk ",
   year = 2016,
   location = "Střední zdravotnická škola a Vyšší odborná škola zdravotnická Nymburk",
   ISBN = "978-80-88058-92-2",
   language = "czech",
   url = "https://publi.cz/books/294/Impresum.html"
}

@book{dna_rna,
  author    = {Gelbart, William M. and Wessler, Susan R. and Lewontin, Richard C. and Suzuki, David T. and Miller, Jeffrey H. and Griffiths, John F.},
  title     = {Introduction to Genetic Analysis},
  year      = {2010},
  publisher = {W. H. Freeman},
  address   = {New York},
  edition   = {7th},
  isbn      = {978-0-7167-3520-5}
}

@article{dna_repetition_mutation,
  title={Mini-and microsatellite expansions: the recombination connection},
  author={Guy-Franck, Richard and Paques, Fr{\'e}d{\'e}ric},
  journal={EMBO reports},
  volume={1},
  number={2},
  pages={122--126},
  year={2000},
  publisher={Wiley Online Library}
}

@article{dna_repetition_duplication,
  title={Mechanisms of change in gene copy number},
  author={Hastings, P J and Lupski, J R and Rosenberg, S M and Ira, G},
  journal={Nature Reviews Genetics},
  volume={10},
  number={8},
  pages={551--564},
  year={2009},
  publisher={Nature Publishing Group}
}

@article{rna_pseudoknots_usage,
	author = {Staple, David W AND Butcher, Samuel E},
	doi = {10.1371/journal.pbio.0030213},
	journal = {PLOS Biology},
	month = {06},
	number = {6},
	pages = {null},
	publisher = {Public Library of Science},
	title = {Pseudoknots: RNA Structures with Diverse Functions},
	url = {https://doi.org/10.1371/journal.pbio.0030213},
	volume = {3},
	year = {2005},
	bdsk-url-1 = {https://doi.org/10.1371/journal.pbio.0030213}
 }


@article{rna_evolution,
	author = {Lorenz, Ronny and Bernhart, Stephan H. and H{\"o}ner zu Siederdissen, Christian and Tafer, Hakim and Flamm, Christoph and Stadler, Peter F. and Hofacker, Ivo L.},
	date = {2011/11/24},
	date-added = {2023-04-24 13:04:26 +0200},
	date-modified = {2023-04-24 13:04:26 +0200},
	doi = {10.1186/1748-7188-6-26},
	id = {Lorenz2011},
	isbn = {1748-7188},
	journal = {Algorithms for Molecular Biology},
	number = {1},
	pages = {26},
	title = {ViennaRNA Package 2.0},
	url = {https://doi.org/10.1186/1748-7188-6-26},
	volume = {6},
	year = {2011},
	bdsk-url-1 = {https://doi.org/10.1186/1748-7188-6-26}
 }

@misc{pseudoknot_img,
    author  = "Sakurambo",
    title   = "A pseudoknot structure in human telomerase RNA",
    year    = "2006",
    urlseen = "24-04-2023",
    url     = "https://commons.wikimedia.org/w/index.php?curid=806690",
}

@misc{img_dna_rna,
    author  = "Sponk",
    title   = "Čeština: Rozdíly mezi DNA a RNA",
    year    = "2014",
    urlseen = "25-04-2023",
    url     = "https://commons.wikimedia.org/wiki/File:Difference_DNA_RNA-EN.svg",
}

@inproceedings{leupold,
author = {Leupold, Peter},
year = {2008},
month = {01},
pages = {281-291},
title = {How to Pop a Deep PDA Matters.}
}

@mastersthesis{controlled_pda,
    author = "Jakub \v{S}oustar",
    type = "Master's thesis",
    title = "Syntaktick\'{a} anal\'{y}za zalo\v{z}en\'{a} na syst\'{e}mech hlubok\'{y}ch z\'{a}sobn\'{i}kov\'{y}ch automat\r{u}",
    school = "Brno University of Technology, Faculty of Information Technology",
    year = 2017,
    location = "Brno, CZ",
    language = "czech",
    url = "https://www.fit.vut.cz/study/thesis/19167/"
}